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v0.8.1 results: tables, manifests, site data and the v081 release entry - #277
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…ve run; site data and shards; v081 is the default release Run on commit 50bc950 with --preset v0.8.1: 19,415 Ascomycota (17,618 called), 3,275 Basidiomycota (2,995 called) and 974 Mucoromycotina (868 called) genomes. 23,214 of the 23,570 genomes with a report in both runs are identical to v0.8.0; the 356 that differ are attributed by control runs (S. pombe silent pair, Hyphopichia MTLA1 record, fallback after withheld hits, nine allowed rust genomes), none unexplained. Determinism check: 0 differences. README, About, landing page and CHANGELOG now describe v0.8.1; v0.8.0 stays in RELEASES as the rollback target. Co-Authored-By: Claude Sonnet 5.5 <[email protected]> Claude-Session: https://claude.ai/code/session_01DDHWqaMRqf5cjFgDKX9CoK
This was referenced Nov 6, 2026
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v0.8.1 results: tables, manifests, site data and the v081 release entry
Run: 110 jobs, all COMPLETED; freeze commit
50bc950(main after #272),--preset v0.8.1. This PR adds the results of that run and makesv081the site's default release. No change tosrc/ordb/.Counts (baseline: v0.8.0 reports)
Two Ascomycota genomes (GCA_016165855.1 P. ulei IBUN, GCA_023522825.1 DampeI2T2) hit the 3,600 s per-genome timeout on an Opteron node and were rerun with
GENOME_TIMEOUT=14400, same frozen code and preset, on an EPYC node (3,063 s and 1,685 s); noted in the AscomycotaMANIFEST.txt. Cause of the slowness:tblastn -seg noon long low-complexity reference proteins (#276; nothing changed in this release).Determinism
60 genomes (seed 20261106) run twice on the frozen worktree: 0 differences in family, idiomorph, confidence, contig, start, end between the two runs or against the campaign. The only difference is the order of gene names in
genes_foundin one genome.Attribution of every difference against v0.8.0
23,570 genomes have a report in both runs: 23,214 identical, 356 differ. No calls lost, no idiomorph flips, nothing unexplained.
--preset v0.8reproduces v0.8.0 for the 7 Ascomycota genomes.rustHDloci), 1 uncalled.resolution_flagson 15,582 loci (Report-only resolution_flags for fragmentary or low-confidence loci #257),two_idiomorphsin 9 Basidiomycota genomes (Report two_idiomorphs for Basidiomycota MAT and redPR (#169) #271); the cassette labels (Cross-family cassette indication with a shared-flank check (#189) #264) changed no call.Site and version
scripts/build_site_data.py(v081in RELEASES,DEFAULT_RELEASE = "v081") and its test; regeneratedweb/intro/data/*; README,web/intro/about.md,landing.html; wheel file names 0.8.0 to 0.8.1 underweb/spike/. Site headline: 22,979 NCBI genomes, 20,871 called, 27,103 loci. Related tests pass.Not done here
TBD, andCITATION.cffdate-releasedis still 2026-10-31: both are the tag date, to be set by the curator.pages.ymlbuild (WASM,npm ci, GmG fetch,check_site.py) could not run locally; a build-only dispatch on this branch is being run.web/intro/data/idiomorph_labels.jsonwas untracked on main before this work and is not included.Merge before tagging v0.8.1 so the site built at the tag carries these data.
🤖 Generated with Claude Code
https://claude.ai/code/session_01DDHWqaMRqf5cjFgDKX9CoK